Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLEKRFNKYLDRIEVSLIRQFDQS----ISDIPGMVKLTLGEPDFTTPDHVKEAAKSAIDAN-QSYYTGMSGLLALRQAAADFAKDKYNLTYNPDCEILVTIGATEALSASLIAILEAGDVVLLPAPAYPGYEPIVNLVGADIVEIDTR-ENDFRLTPEMLETAIIQQGEKLKAVLLNYPTNPTGITYSRQEIASLAEVLKKYDIFVISDEVYSELTYTGQQHVSIAEY---LPNQTILINGLSKSHAMTGWRVGLVYAPEAFIAQIIKSHQYMVTAASTISQFAGVEALSVGKNDTLPMRQGYIKRRDYIIDKMSKL-GFKIIKPSGAFYIFAKIPDSYPQDSFKFCQDFAYQQAVAIIPGVAFGKYGEGYIRLSYAASMEVIETAMARLKVFMESYEG |
1J32 Chain:A ((2-387)) | -----KLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-RYGPAAGEPRLREAIAQKLQRDNGLCYGAD-NILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT-P--KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-GRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKFLHGIL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1J32.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257106 for 3354 contacts (-76.7/contact) +
2D Compatibility (PS) -40668 + (NN) -17404 + (LL) 800
1D Compatibility (HY) -25200 + (ID) 6050
Total energy: -345628.0 ( -103.05 by residue)
QMean score : 0.555
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