Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNESKLFIYFKTKF--SNYLNDVLRHQDCQKRQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLISG--ERFAGKKQFIRDIQPFFNAFKAD---
4H5B Chain:A ((2-153))
ETALLTLDTLAKYLQE-KEVQLDIEENGGQRFIRMGWRFEMGDAAVLVSVNDGP---NNTSRLEITCVTQKTYADRRAEVAMMLNDRNRE---------RAFARSIDQEGNVWLEYVGFYPTL-------AEMPQETFDTLFGGVLMHFQDDYAALEGYVPQEGMQIQQPQA
General information:
TITO was launched using:
RESULT:
Template:
4H5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40914 for 917 contacts (-44.6/contact) +
2D Compatibility (PS) -15197 + (NN) -4461 + (LL) 2068
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -64404.0 ( -70.23 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_4H5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H5B-query.scw
PDB file :
Tito_Scwrl_4H5B.pdb
: