Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHL-PIKPKTKVAIVTCMDSRLHV--AQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVD--MHGHDF---LPFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
1G5C Chain:A ((2-167))
---IIKDILRENQDFR----FRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMRELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLY
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86261 for 1054 contacts (-81.8/contact) +
2D Compatibility (PS) -17335 + (NN) -12327 + (LL) 284
1D Compatibility (HY) -14000 + (ID) 2800
Total energy: -132439.0 ( -125.65 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: