Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------------------------------------------------------------------------------------------------MEISLLTDIGQRRSNNQDFIN------QFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVGDN--IIFAHVGDSRIGIVRQGEYHLLTSDHSL--VNELVKAGQLTEEEAASHPQKNI-----ITQSIGQAN-----PVEPDLGVHLLE-EGDYLVVNSDGLTNMLSNADIATVLTQ------EKTLDDKNQDLITLANHRGGLDNITVALVYVESEAV------- |
| 4JND Chain:A ((18-441)) | EDHIGDRRRSVRSLLEEAFADEMEKTSYDVEVIAGPVHDVFGDAIHDIFQKMMKRGQAVDFCHWVSHLIATEIDEKFSEVAFRDVQYNPDIYVTDSTTEAKKLFNDKIWPAIDKILQQNAETCPILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPS--DSLEDQLRKSLELLDERMTVRSVKECWKG-GSTAVCCAIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGRPMISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVEDYAELSRFICTKAIEAGSADNVSVVIGFLRPPQDVWKLMKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87865 for 2069 contacts (-42.5/contact) +
2D Compatibility (PS) -25996 + (NN) -7773 + (LL) 488
1D Compatibility (HY) -6000 + (ID) 2350
Total energy: -129496.0 ( -62.59 by residue)
QMean score : 0.369
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