Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
3HJN Chain:A ((1-181))
----MFITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREPGGTETGEKIRKILLE---EEVTPKAELFLFLASR-NLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKR-----K---NR--FEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR---
General information:
TITO was launched using:
RESULT:
Template:
3HJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43819 for 1432 contacts (-30.6/contact) +
2D Compatibility (PS) -20024 + (NN) -14435 + (LL) 2164
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -96214.0 ( -67.19 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3HJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJN-query.scw
PDB file :
Tito_Scwrl_3HJN.pdb
: