Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVG-KLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQ-EINVERIVL
2VVT Chain:A ((23-285))
-NQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTP-----PHEFYTTGSAKMFEEIASSWLGIENLKAQQIHL
General information:
TITO was launched using:
RESULT:
Template:
2VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -242594 for 2338 contacts (-103.8/contact) +
2D Compatibility (PS) -27398 + (NN) -8372 + (LL) 184
1D Compatibility (HY) -31600 + (ID) 7950
Total energy: -317730.0 ( -135.90 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVT-query.scw
PDB file :
Tito_Scwrl_2VVT.pdb
: