Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLARQMEQ---
1J3W Chain:A ((6-139))
-------LVLYGAPYERAVEVLEETLRET-GARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAAT---------------------QALAKLLGEARFQEEVHQGERMGLYVDEA------------------GEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEALAN
General information:
TITO was launched using:
RESULT:
Template:
1J3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13765 for 1019 contacts (-13.5/contact) +
2D Compatibility (PS) -14336 + (NN) -7713 + (LL) 2748
1D Compatibility (HY) -400 + (ID) 950
Total energy: -34416.0 ( -33.77 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1J3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3W-query.scw
PDB file :
Tito_Scwrl_1J3W.pdb
: