Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLA-RLISQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQN-GKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK
1SSQ Chain:D ((80-254))
--------DIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFD-VDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVSQDKAAKPAFDMNQ-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129534 for 1462 contacts (-88.6/contact) +
2D Compatibility (PS) -18504 + (NN) -5110 + (LL) 3716
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -166232.0 ( -113.70 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSQ-query.scw
PDB file :
Tito_Scwrl_1SSQ.pdb
: