Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKE---------------RTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGE--KTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW
5AJ3 Chain:G ((80-241))
-----------TKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAASAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHYRW
General information:
TITO was launched using:
RESULT:
Template:
5AJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30967 for 965 contacts (-32.1/contact) +
2D Compatibility (PS) -16160 + (NN) -8699 + (LL) 344
1D Compatibility (HY) -10800 + (ID) 2500
Total energy: -68782.0 ( -71.28 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_5AJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AJ3-query.scw
PDB file :
Tito_Scwrl_5AJ3.pdb
: