Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMKEAVTVSNVTKHFQRKTAVNNISFSIEKGEIAAILGPNGAGKTTVVSMILGLLKPSEGEIKLFNRVPDDQ--QVREKIGVMLQEVSVMPGLKVDEILELFRSYYPNP-----LSMKELVSLTALTKEDLKTRAEKLSGGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQTIHGLSD-QGKTIIFSTHYLQEADDAAQRILFFTEGQLVADGSPMQIRSRIQKQSVSFTLHSSESLERLSCHPEVERVIHEHERTIIQTSNTDKVLALIFQENIHARDIRIEQATLDEAFRQLADGNREAM
4YER Chain:A ((2-308))-MEDIIVVENLVKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILELLEFVELLE-FKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTELKRMVGKEIIYVR-----------DFIESCR-KLPDGRLELNVED--------------IEEITYHKPTLNDVFLHLTGRELR--


General information:
TITO was launched using:
RESULT:

Template: 4YER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1388 38053 27.42 140.94
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : 27.42
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.121

(partial model without unconserved sides chains):
PDB file : Tito_4YER.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YER-query.scw
PDB file : Tito_Scwrl_4YER.pdb: