Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEFDPKLRFAQSPVAR-LATSTPDGTPHLVPVVFALGARRPAEATGADVIYTAVDAKRKTTQRLRRLANLEHNPRASVLVDSYADDWTQLWWVRADGVAAIHRDGEVMRAAYRLLRAKYAQYQSVPLNGPVIAIAVQRWASWHA---
2ASF Chain:A ((11-135))
---SDDALAFLSERHLAMLTTLRADNSPHVVAVGF-------TFDPKTHIARVITTGGS------QKAVNADRSGLAVLSQVD------GARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNP-RRVVIEVQIERVLGSADLLD
General information:
TITO was launched using:
RESULT:
Template:
2ASF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69687 for 885 contacts (-78.7/contact) +
2D Compatibility (PS) -13436 + (NN) -7685 + (LL) 1524
1D Compatibility (HY) -400 + (ID) 1250
Total energy: -90934.0 ( -102.75 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_2ASF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ASF-query.scw
PDB file :
Tito_Scwrl_2ASF.pdb
: