Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALGK
4MKH Chain:A ((3-208))
MNIVLMGLPGAGKGTLAEKIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVRKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQMAPLLAFYDSKEVLVNVNGERDIEDVFA--------
General information:
TITO was launched using:
RESULT:
Template:
4MKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59340 for 1323 contacts (-44.9/contact) +
2D Compatibility (PS) -19261 + (NN) -14691 + (LL) 732
1D Compatibility (HY) -17600 + (ID) 4200
Total energy: -114360.0 ( -86.44 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4MKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKH-query.scw
PDB file :
Tito_Scwrl_4MKH.pdb
: