Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVG-GPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH
4FN4 Chain:D ((11-194))
---------IVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGK-GVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNI----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4FN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144694 for 1545 contacts (-93.7/contact) +
2D Compatibility (PS) -19758 + (NN) -1363 + (LL) 4780
1D Compatibility (HY) -13600 + (ID) 3100
Total energy: -177735.0 ( -115.04 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4FN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FN4-query.scw
PDB file :
Tito_Scwrl_4FN4.pdb
: