Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALG-TKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
1RYB Chain:A ((1-190))
-YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQS-KSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKG-----ERFNLV
General information:
TITO was launched using:
RESULT:
Template:
1RYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114122 for 1549 contacts (-73.7/contact) +
2D Compatibility (PS) -19600 + (NN) -4923 + (LL) 616
1D Compatibility (HY) -14400 + (ID) 3800
Total energy: -156229.0 ( -100.86 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1RYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYB-query.scw
PDB file :
Tito_Scwrl_1RYB.pdb
: