Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIIPPRLKEPLYRLYELRLRQGLAASKSDLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVV--EEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARHRSYGR
2DTN Chain:B ((15-241))
------------------------------TLKHLAIIMDGNGRWAKLKN-KARAYGHKKGVKTLKDITIWCANHKLECLTLYA----------------MKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESP---------LENE-----ISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG-
General information:
TITO was launched using:
RESULT:
Template:
2DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102633 for 1522 contacts (-67.4/contact) +
2D Compatibility (PS) -22102 + (NN) -9484 + (LL) 4628
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -148441.0 ( -97.53 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_2DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTN-query.scw
PDB file :
Tito_Scwrl_2DTN.pdb
: