Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERY-QVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAA-ARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
3OUT Chain:A ((5-262))
--LDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSLV-D--NLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKIL--DVKLIDPSLQASKMLYSLLFENKLLNTTK--NPEYRFYVTDIPLKFRSVGEMFLQTE---MQHLEI----
General information:
TITO was launched using:
RESULT:
Template:
3OUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -239008 for 2314 contacts (-103.3/contact) +
2D Compatibility (PS) -28244 + (NN) -16062 + (LL) 604
1D Compatibility (HY) -22400 + (ID) 4200
Total energy: -309310.0 ( -133.67 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3OUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OUT-query.scw
PDB file :
Tito_Scwrl_3OUT.pdb
: