Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYPLGEALLALYRWRGPLINAGVGGHGYTYLLGAEANRFVFANA-DAFSWSQTFESLVPVDGPTALIVSDGADHRRRRSVVAPGLRHHHV--QRYVATMVSNIDTVIDGWQP--GQRLDIYQELRSAVRRSTAESLFGQRLAVHSDFLGEQLQPLLDLTRR-----PPQVMRLQ-QR--VNSPGWRRAMAARKRIDDLIDAQIADARTAP--RPDDHMLTTLISGCSEE----GTTLSDNEIRDSIVSLITAGYETTSGALAWAIYALLTVPGTWESAASEVARVLGGR-VPAADDLSALTYLNGVVHETLRLYSPGVI-SARRVLRDLWFDGHRIRAGRLLIFSAYVTHRLPEIWPEPTEFRPLRWDPNAADYRKPAPHEFIPFSGGLHRCIGAVMATTEMTVILARLVARAMLQLPAQRTHR---IRA-ANFAALRPWPGLTVEIRKSAPAQ |
| 2FDV Chain:A ((31-472)) | ---QMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPG-PQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQ--FKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLKSS--QSPKDIDVSPKHVGFATIPR-NYTMSFLPR---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242184 for 3472 contacts (-69.8/contact) +
2D Compatibility (PS) -43828 + (NN) -6384 + (LL) 844
1D Compatibility (HY) -22800 + (ID) 3900
Total energy: -318252.0 ( -91.66 by residue)
QMean score : 0.430
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