Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKDKLHWLAMHGVIRGIAAIGIRRGDLQARLIADPAVATDPVPFYDEVRSHGALVRNRAN-----YLTVDHRLAHDLLRSDDFRVVSFGENLPPPLRWLERRTRGDQLHPLREPSLLAVEPPDHTRYRKTVSAVFTSRAVSALRDLVEQTAINLLDRFAEQP-GIVDVVGRYCSQLPIVVISEILGVPEHDRPRVLEFGELAAPSLDIGIPWRQYLRVQQGIRGFDCWLEGHLQQLRHAPGDDLMSQLIQIAESGDNETQLDETELRAIAGLVLVAGFETTVNLLGNGIRMLLDTPEHLATLRQHPELWPNTVEEILRLDSPVQ-LTARVACRDVEVAGVRIKRGEVVVIYLAAANRDPAVFPDPHRFDIERPNAGRHLAFSTGRHFCLGAALARAEGEVGLRTFFDRFPDVR---AAGAGSRRDTRVLRGWSTLPVTLGPARSMVSP |
2BVJ Chain:B ((45-423)) | -------------------------------------AADPYPTYARLRAEGPAHRVRTPEGDEVWLVVGYDRARAVLADPRFSK-----------DWRNSTTPL------LNHNMLESDPPRHTRLRKLVAREFTMRRVELLRPRVQEIVDGLVDAMLAAPDGRADLMESLAWPLPITVISELLGVPEPDRAAFRVWTDAFVFPDDPA-------QAQTAMAEMSGYLSRLIDSKRGQDGEDLLSALVRT--SDEDGSRLTSEELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAALRADMTLLDGAVEEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAG-HLAFGHGIHFCIGAPLARLEARIAVRALLERCPDLALDVSPGELVWYPNPMIRGLKALPI----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214456 for 2889 contacts (-74.2/contact) +
2D Compatibility (PS) -38612 + (NN) -14721 + (LL) 5024
1D Compatibility (HY) -26400 + (ID) 6950
Total energy: -296115.0 ( -102.50 by residue)
QMean score : 0.502
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