Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA
1NDP Chain:B ((9-138))
--ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPL-ASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWF---
General information:
TITO was launched using:
RESULT:
Template:
1NDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82828 for 1016 contacts (-81.5/contact) +
2D Compatibility (PS) -13942 + (NN) -5008 + (LL) 212
1D Compatibility (HY) -12400 + (ID) 3550
Total energy: -117516.0 ( -115.67 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1NDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDP-query.scw
PDB file :
Tito_Scwrl_1NDP.pdb
: