Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP
3O8G Chain:A ((48-107))
--------------------------AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAV----LLTLLDRVVNQADMAL-------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3O8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36223 for 352 contacts (-102.9/contact) +
2D Compatibility (PS) -6589 + (NN) -3110 + (LL) 10820
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -42202.0 ( -119.89 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3O8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O8G-query.scw
PDB file :
Tito_Scwrl_3O8G.pdb
: