Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTARLRPELAGLPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATD----TVNRYPDNGCVQLKAALARHLGP--D--FAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVPLT-DHTFDLYAMLATVT-DRTRLIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAHNNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVVAERARVSAELRAAGFTL-PPSQANFVWLPLGSRTQDFVEQAADARIVVRPYG-TDGVRVTVAAPEENDAFLRFARRWRSDQ |
| 4R8D Chain:A ((17-368)) | -----RADLRGKAPYGAPQ-LAVPVRLNTNENPHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAP--GIAIVDEAYGEFSSQPSAVSLV--EEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFAD-APAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIAT-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237262 for 2855 contacts (-83.1/contact) +
2D Compatibility (PS) -37547 + (NN) -18055 + (LL) 1068
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -311996.0 ( -109.28 by residue)
QMean score : 0.589
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