Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIDLLDNLLFAMV-------RTGTPLLLVALGELVC-ERSGVLNLGQEGMMLFGAVIGFM-VAFSSGSLWLGVLLA----VLAGMLLAALFAGVALYLNANQVACGLALTI-FGVGLASFVGAAWVGKPLQGFAPLALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGEN-PDA--------ASAMGLPVLRVRTLAVLFGGAMAGLAGAYL------SLAYTPMWAENMTAGRGWIALALVVFASWRVLRVLLGAWLFGLASILHLV-----AQGVGLSIPANLLAMLPYAA----TILVLVLLSRD---------------ALRTRLYAPVSLG-------------------------QPWKAGH- |
| 4Q98 Chain:A ((9-365)) | ---VVETNATVSFIIKSGESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNL---IMTGKSAAFTIKP---GSNHYGYPGGT---------------ASDNLVSAGTPL------AVTRVHAGISFAGVEVNMATQYQNYYSFKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNPLTEPALTDAINAGFCDGDGTTYYPVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNITGPGTNTPENPQPVQANLNVTCQVTPWVVVNQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -268032 for 2032 contacts (-131.9/contact) +
2D Compatibility (PS) -28522 + (NN) 14917 + (LL) 3280
1D Compatibility (HY) 1600 + (ID) 3250
Total energy: -280007.0 ( -137.80 by residue)
QMean score : 0.072
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