Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTAIYLAGPDVFRPDAEAHGETLKALCAEFGFVGLYPLDHAL-----------PADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDA--GAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
1F8X Chain:A ((2-157))
PKKTIYFGAG-WFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIP---DEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQ-------LKDFNFNKPRFDFYEGAVY-------------------
General information:
TITO was launched using:
RESULT:
Template:
1F8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65766 for 1050 contacts (-62.6/contact) +
2D Compatibility (PS) -15490 + (NN) -9615 + (LL) 948
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -98073.0 ( -93.40 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1F8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F8X-query.scw
PDB file :
Tito_Scwrl_1F8X.pdb
: