Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRA-----RGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
2ZTU Chain:D ((2-260))
--LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVR------------------ETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWTAR
General information:
TITO was launched using:
RESULT:
Template:
2ZTU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146045 for 2022 contacts (-72.2/contact) +
2D Compatibility (PS) -25186 + (NN) -8096 + (LL) 1292
1D Compatibility (HY) -20800 + (ID) 7400
Total energy: -206235.0 ( -102.00 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTU-query.scw
PDB file :
Tito_Scwrl_2ZTU.pdb
: