Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVVLYKRLSAPLMERLRERVEVLLVEEPGRDGLARLRDA------LPEAHGLLGASLRLDAGLLDLAPRLEAIASVSVGVDNYDIDYLDRRGILLSNTPDVLTETTADTGFALILATARRVVELAGWVRAGE---WKKSVGAAQFGTDVHGKTLGIVGMGRIGEALARRGHHGFGMRVLYHS-HSPKPHVEERYAASYRPLDALLEESDFVCLTLPLTAATEGLIGAAQFARMRPQAIFINISRGRVVDEAALIEALAQRRIRAAGLDVFERE-------PLSPDSPLLRLPNVVATPHIGSATEETREAMARCAVDNLLAALAGARPLNLVNPSAWARRRGA |
| 4NU5 Chain:B ((17-326)) | --------QLLAPHCELITNQTDSTLTRE---EILRRCRDAQAMMAFMPD---------RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRF----YGTGLDNATVGFLGMGAIGLAMADR-LQGWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVALEIERCAAQNILQALAGERPINAVN---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NU5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144300 for 2265 contacts (-63.7/contact) +
2D Compatibility (PS) -32088 + (NN) -15384 + (LL) 1940
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -216832.0 ( -95.73 by residue)
QMean score : 0.438
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