Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDP-G-LSGKERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRH-------VEIMVTSLAE-S----PEETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN
3RD3 Chain:A ((7-192))
------DTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPP-CDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLL-
General information:
TITO was launched using:
RESULT:
Template:
3RD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61819 for 1188 contacts (-52.0/contact) +
2D Compatibility (PS) -19184 + (NN) -14925 + (LL) 348
1D Compatibility (HY) -6000 + (ID) 1600
Total energy: -103180.0 ( -86.85 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3RD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD3-query.scw
PDB file :
Tito_Scwrl_3RD3.pdb
: