Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3DP1 Chain:D ((14-158))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER--
General information:
TITO was launched using:
RESULT:
Template:
3DP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117055 for 1034 contacts (-113.2/contact) +
2D Compatibility (PS) -14996 + (NN) -5400 + (LL) 784
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -157017.0 ( -151.85 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3DP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP1-query.scw
PDB file :
Tito_Scwrl_3DP1.pdb
: