Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATLFDPIVLGDLELPNRIVMAPLTRCRADEGRVPNALMAEYYAQRAD-AGLILSEATAVTPMGVGYPDTPGIWSDDQVRGWSNVTKAVHAAGGRIFLQLWHVGRISDPLYL-NGELPVAPSAI-AAEGHVSLVRPKRPYVT---PRALDTEEIADIVEAYRQGAERAKAAGFDGVEIHGANGYLLDQFLQDSTNKRTDRYGGSIENRARLLLEVTDAAISVWGAQRVGVHLAPRADSHDMGDSNRLETFSHVARELGK------RGIAFI------CAREAQADDSIGV--ALKKAFGGPYIANEQFTLDSANAILAKGDADAVAFGVPFIANPDLVERLRQGAELNPPRPETFYTGG-TEGYLDYPTLA |
2Q3O Chain:A ((11-386)) | --TLFSSYKMGRFDLSHRVVLAPMTRCRALNG-VPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPR-------EEEAKLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Q3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178216 for 3069 contacts (-58.1/contact) +
2D Compatibility (PS) -37054 + (NN) -19672 + (LL) 1264
1D Compatibility (HY) -28000 + (ID) 7900
Total energy: -269578.0 ( -87.84 by residue)
QMean score : 0.643
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