Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MNDTGRRILLNCDMGESFGAW------RMGDDVH--SMPLVDQANLACGFHA---GDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCR--------------SLGTQVAYVKPHGALYNDLVGD-DELLRAVLDACAAYRKGLPLMVLALADNGRELELADEADVPLLF----------------EAFADRAYLPDGRLAPRR---LGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSL--CVHGDNPQSLAVLRRLRAALDSL- |
| 4U9O Chain:A ((14-332)) | PIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTG----KVYVCKKGTSLPRSQQPNVEEHVFDGPHPDHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLREG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74263 for 1936 contacts (-38.4/contact) +
2D Compatibility (PS) -24795 + (NN) 3082 + (LL) 420
1D Compatibility (HY) -5200 + (ID) 2300
Total energy: -103056.0 ( -53.23 by residue)
QMean score : 0.224
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