Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGTLYIVSAPSGAGKTSLVKALLDAAP-EVRVSVSHTTRGMRPGEVDGVNYHFTSREEFLAMLERNEFLEHAEVFGNLYGTSQRWVEKTLAEGLDLILEIDWQGAQQVRRLMP--EAQSIFILPPSQEALRQRLTNRGQDSDEVIERRMREAVSEMSH--YVEYDHLVINDDFAHALDDLKAIFRARQLRQDAQQQRHAELLGRLLA
2QOR Chain:A ((11-198))
-RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELREYLLGSY-------------------
General information:
TITO was launched using:
RESULT:
Template:
2QOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54963 for 1376 contacts (-39.9/contact) +
2D Compatibility (PS) -20988 + (NN) -14406 + (LL) 2200
1D Compatibility (HY) -12800 + (ID) 2950
Total energy: -103907.0 ( -75.51 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2QOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QOR-query.scw
PDB file :
Tito_Scwrl_2QOR.pdb
: