Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNYKLLYFNMRGRAEIIRYIFAYLDIKYEDHRIEQADWPKIKPTLPFGKIPVLEVEGLTIHQSLAIARYLTKNTDLAGKTALEQCQADAVVDTLDDFMSLFPWAEKDQDLKERMFNELLTHQAPRLLKDLDTYLGDKEWFIGNYVTWADFYWDICSTTLLVLKPGLLDIYPKLVSLRNKVQAIPAISAWILKRPQTKL
1V40 Chain:A ((1-198))
-PNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
General information:
TITO was launched using:
RESULT:
Template:
1V40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139945 for 1441 contacts (-97.1/contact) +
2D Compatibility (PS) -21077 + (NN) -8451 + (LL) 208
1D Compatibility (HY) -28000 + (ID) 7900
Total energy: -205165.0 ( -142.38 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1V40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V40-query.scw
PDB file :
Tito_Scwrl_1V40.pdb
: