Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEEAILLNQTSLVTYFRLRGLSVNHKARIAMFSMFLIFYVLTLIGNVLIVITIIYDHRLHTPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDA-CVTQMFFLHLFACTEIFLLTVMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDNFFCDVPQVIKLACIDT---PYVLEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKWKALSTCAA-----------------HLTVVTLFLGHCIFIYSRPSTSLPEDKAVSVFFTAVTPLLNPII--YTLRNEEMKSALNKLVGRKERKEEK--------------------------------- |
| 4XNV Chain:A ((38-382)) | --------------SFK-CALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLY-VLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSLGRLKKKNAICISVLVWL------IVVVAISPILFYSGTGVRKN--------KTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPL-RRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197754 for 1877 contacts (-105.4/contact) +
2D Compatibility (PS) -28907 + (NN) -2762 + (LL) 2320
1D Compatibility (HY) -24800 + (ID) 2300
Total energy: -254203.0 ( -135.43 by residue)
QMean score : 0.160
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