Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNV--EKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP--SFKRIPEVENLVYAAKQSGVAHIIF-----IGYYADQHNNPFHMSPYFGYASRLLSTSGIDYTYVRMAMYMDPLKPYLPELM----NMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTW-GKRYLLSGYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQTLQSFLQENI----- |
2WMD Chain:A ((5-299)) | KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDI-GVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKL--GFPGARDLANMFRFYALRPDRD---IELTLRLNPKALTLDQWLEQHKGDFNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203345 for 2306 contacts (-88.2/contact) +
2D Compatibility (PS) -30298 + (NN) -13077 + (LL) 184
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -256936.0 ( -111.42 by residue)
QMean score : 0.451
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