Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRITGERIYLRPFQIIDANQKLAFHLANKAFFEGYSMERDDRFYTIEEQQSLISRLEDFAASDVEYYYGIFLNDTDELIGTINLFSILRESLQSAFIGYFLDKKHNGNGYATEAVQLIVDFGFDILGLHRIEAGVMPKNERSKQVLLKAGFHLEGLAVQNVRINGTWEDHQVLAIINPGD
2FCK Chain:A ((10-181))
--IVTQRLQLRLITADEAEELVQCIRQSQTL-HQWVDW-----FSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFY-HTFNMASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP---
General information:
TITO was launched using:
RESULT:
Template:
2FCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85755 for 1266 contacts (-67.7/contact) +
2D Compatibility (PS) -17909 + (NN) -2366 + (LL) 332
1D Compatibility (HY) -9600 + (ID) 1850
Total energy: -117148.0 ( -92.53 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_2FCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FCK-query.scw
PDB file :
Tito_Scwrl_2FCK.pdb
: