Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKHSILLVDGYNMIAFWKDTRQLFKSNRLEEAREVLLRKLNHYAHFEHIDIICVFDAQYVPGVRQRYDQYKISVIFTEEDETADSYIERAAAELNQSVLNLVSVATSDLNEQWTIFSQGTLRVSARELEQRVATVKSDLDKMSSQIDLSTPKLRPWNDEQLGKLKDFLDGM-
3OQ4 Chain:A ((119-242))
HMKRDSRIYFDITD-----DVEMNTYNKSKMDKRRDLLKRGFLT-----------------LGAQITQFFDTTVTIVITR----------RSVENIYLLKDTDILSRAKKNY--MKVWS-------YEKAARFLKNLDVDLDHLSKTKSASLAA---------PTLSNLLHNEK
General information:
TITO was launched using:
RESULT:
Template:
3OQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7775 for 808 contacts (-9.6/contact) +
2D Compatibility (PS) -13253 + (NN) -5929 + (LL) 4424
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -28183.0 ( -34.88 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3OQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OQ4-query.scw
PDB file :
Tito_Scwrl_3OQ4.pdb
: