Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVLRFMPWSPDSIALTESIRFKFFETFAK--TGQKMIFTIVIDFNDSRDVVFLEKIQTVFQSHNQEVLFVELETELSERLKRNRTENRLKHKPSKR-DIKWSENDICLTMDYAIFNPEVAPEALTYYHKINNTCL-TATETAYLIIQKINQIKEKN
3IIJ Chain:A ((14-177))
--ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPIL-DEDRVVDELDNQMREGGVIVDYHGCD-------FFP-------E-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK---------EEIVHQLPSNKPEELENNVDQILKWIEQWIKDH
General information:
TITO was launched using:
RESULT:
Template:
3IIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44412 for 1167 contacts (-38.1/contact) +
2D Compatibility (PS) -16615 + (NN) -78 + (LL) 1712
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -63243.0 ( -54.19 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_3IIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IIJ-query.scw
PDB file :
Tito_Scwrl_3IIJ.pdb
: