Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLVATDMDGTFLDENGTYDKKRLANVLKKFKEQGIVFTAASGRSLLSLEQLFADFR---DQMAFIAENGSAAVLF--NRLAYEQHLSREQYLDIIDHLSKSPYMENNEYVLSGKDGAYILSDANPDYIEFITHYYDNLQKV-SHFEDVD--DIIFKVTANFTEETVRQAEEWVNQAIP-YTTAVTTGFKSIDIILSSVNKRNGLEHLCEQYGIRAEEVLSFGDNINDLEMLEWSGKAIATENARPEVKEIADCIIGHHNNQAVMAYLESMVD |
| 1RKQ Chain:A ((4-270)) | AIKLIAIDMDGTLLLPDHTISPAV-KNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREV----GSHFHALDRTTLYTANRDIS-YYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115444 for 2293 contacts (-50.3/contact) +
2D Compatibility (PS) -27747 + (NN) -8172 + (LL) 364
1D Compatibility (HY) -12000 + (ID) 3000
Total energy: -165999.0 ( -72.39 by residue)
QMean score : 0.577
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