Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDRYIAFANSPVGRRLVGAVGLPSPLRLERWQAGRVRPVDGPLVIGGSGALAEAVLPFAGKLTDAVFAAVDGQFELPRWTAEHSPRAKAVLFDASGLTRFEQLVALRDFFQPVLKGLDKCPKVVVLGRPPESLKDPVTASVQRSLEGFTRSLGKEIRRGGNVQLLYVGKGAEDQLEGALRFFLSPKSAYVSGQVIRLAANSAQVHDWSKPLAGQRALVTGAARGIGAAIAETLARDGAEVVLLDVPPAREALEGLAARLGGRAVALDICAADAG---------QQLVEALPEGVDIVVHNAGITRDKTLAKMSSDFWNSVINVNLNAPQVLTQALLDGGKLHDNGRVVLLASISGIAGNLGQSNYAVSKAGLIGLAQAWAPALGKRGITINAVAPGFIETQMTAAIPLTIREAGRRMNSMSQGGLPQDVAETVAWFAQPSSGAVSGQVLRVCGQSLLGA |
4JRO Chain:D ((26-267)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLQGKVAVVTGGSRGIGRDIAINLAKEGANI-FFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGR-VDILVNNAGITRDNLLMRMKEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKAGVIGLTKTTARELAPRGINVNAVAPGFITTDMT---DEKTKEAMLAQIPLGAYGTTEDIANAVLFLASDASKYITGQTLSVDG------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4JRO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -131924 for 1981 contacts (-66.6/contact) +
2D Compatibility (PS) -24421 + (NN) -4760 + (LL) 14136
1D Compatibility (HY) -15200 + (ID) 4600
Total energy: -166769.0 ( -84.18 by residue)
QMean score : 0.490
|
|
|