Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
3PPT Chain:A ((1-130))
-AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKG-SPDSILSREVKDGKMHMILKVNDVVCTRIYKRV
General information:
TITO was launched using:
RESULT:
Template:
3PPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41174 for 950 contacts (-43.3/contact) +
2D Compatibility (PS) -14727 + (NN) -3769 + (LL) 132
1D Compatibility (HY) -7200 + (ID) 2900
Total energy: -69638.0 ( -73.30 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3PPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPT-query.scw
PDB file :
Tito_Scwrl_3PPT.pdb
: