Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1O3W Chain:A ((1-122))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYMQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDMKN----
General information:
TITO was launched using:
RESULT:
Template:
1O3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58168 for 887 contacts (-65.6/contact) +
2D Compatibility (PS) -12859 + (NN) -8063 + (LL) 2456
1D Compatibility (HY) -16400 + (ID) 4750
Total energy: -97784.0 ( -110.24 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1O3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O3W-query.scw
PDB file :
Tito_Scwrl_1O3W.pdb
: