Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAPWLQLLSLLGLLPGAVAAPAQPRAASFQAWGPPSPELLAPTRFALEMFNRGRAAGTRAVLGLVRGRVRRAGQGSLYSLEATLEEPPCNDPMVCRLPVSKKTLLCSFQVLDELGRHVLLRKDCGPVDTKVPGAGEPKSAFTQGSAMISSLSQNHPDNRNETFSSVISLLNEDPLSQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAF--GMQFYRH-GISRPLRPLCSP--WLIDHAVLLVGYGNRS-DVPFWAIKNSWGTDWGEKGYYYLHRGS----GACGVNTMASSAVVD |
| 3U8E Chain:A ((1-220)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDT------GGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP-IAARIDGYTNVPNSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGS--SCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U8E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96192 for 1772 contacts (-54.3/contact) +
2D Compatibility (PS) -21480 + (NN) -4965 + (LL) 17624
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -122563.0 ( -69.17 by residue)
QMean score : 0.327
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