Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPW-KLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
1KMV Chain:A ((2-185))
----GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSS---VEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPE---LANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEID-----LEKYKLLP-----EYPG--VLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
1KMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127667 for 1369 contacts (-93.3/contact) +
2D Compatibility (PS) -20066 + (NN) -6568 + (LL) 1240
1D Compatibility (HY) -11600 + (ID) 3300
Total energy: -167961.0 ( -122.69 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1KMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KMV-query.scw
PDB file :
Tito_Scwrl_1KMV.pdb
: