Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
2J32 Chain:A ((6-249))
----------DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIAT-----------------------HKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYH---
General information:
TITO was launched using:
RESULT:
Template:
2J32.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157615 for 1904 contacts (-82.8/contact) +
2D Compatibility (PS) -24444 + (NN) -4361 + (LL) 2384
1D Compatibility (HY) -20000 + (ID) 5150
Total energy: -209186.0 ( -109.87 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2J32.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J32-query.scw
PDB file :
Tito_Scwrl_2J32.pdb
: