Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4JOS Chain:A ((24-250))
KKIAILGAMEIEIQPILQKLEKYETVEYANNKYYVANYNGIELVVAYSKIGKVFSSLTATIMIEHFGVDALLFTGVAGGLQ-DLQVGDMIAATATVQHDVDITAFGYPYGKIPISEVEIATSARILEQAKVIAKELNLNLHTGVIATGDQFVHSAERKDFVVKEF-DAKAIEMEGASVNLICNEMNIPSFILRSISDTADGDAPDNFDEFAKMAANRSADFVMKLVDRI---
General information:
TITO was launched using:
RESULT:
Template:
4JOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170870 for 2052 contacts (-83.3/contact) +
2D Compatibility (PS) -24597 + (NN) -15780 + (LL) -208
1D Compatibility (HY) -18400 + (ID) 3800
Total energy: -233655.0 ( -113.87 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4JOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JOS-query.scw
PDB file :
Tito_Scwrl_4JOS.pdb
: