Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKVIDKMGGPEEFIQRFLPRELQIVRTLDHKNIIQVYEMLESADGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQGFN----LKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGIPHDSKKGDVWSMGVVLYVMLCASLPF-DDTDIPKMLWQQQKGVSFPTHL--SISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAST
4MVF Chain:A ((55-314))
-----LEDKYIIDEKLGQGTYGCVYKGIDKVTNQLYAIK--EEKKDRLKNINRFF-QEIEIMKKLDHPNIVKLYETYEN-DNYIYLIMELCSGRELFDSIIENGSFTEKNAATIMKQIFSAIFYLHSLNIVHRDLKPENFLFQSENKDSLLKIIDFGLSKNL--------------------------KYD-KKCDIWSSGVIMYTLLCGYPPFY----------------CFYENDWGSISSDAKNLITKLLTYNPNERCTIEEALNHPWITQM
General information:
TITO was launched using:
RESULT:
Template:
4MVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129023 for 1625 contacts (-79.4/contact) +
2D Compatibility (PS) -22969 + (NN) -9121 + (LL) 3364
1D Compatibility (HY) -20400 + (ID) 4300
Total energy: -182449.0 ( -112.28 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_4MVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVF-query.scw
PDB file :
Tito_Scwrl_4MVF.pdb
: