Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSISSPRINVMLDSVRSASKQLMRDFNEL--QISNV-KSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEA--------------------------KEKDYTWFIMPIEGRENFSSRM-VYFAVSVCLVHKNKVVAAVVNTPAL----------RETFWAEEKKGAFLEDFRSRHIKMRMKSHEGSLIDVSG----NLLNKLLP--GNSNIRSVGSTVLGFTYLAAGRYSGIVYS--GVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT |
1JP4 Chain:A ((8-275)) | ---LMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLP--EVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEA-------PAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNPLQYDKEVK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124146 for 1798 contacts (-69.0/contact) +
2D Compatibility (PS) -23011 + (NN) -4102 + (LL) 1500
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -162259.0 ( -90.24 by residue)
QMean score : 0.431
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