Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSISSPRINVMLDSVRSASKQLMRDFNEL--QISNV-KSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEA--------------------------KEKDYTWFIMPIEGRENFSSRM-VYFAVSVCLVHKNKVVAAVVNTPAL----------RETFWAEEKKGAFLEDFRSRHIKMRMKSHEGSLIDVSG----NLLNKLLP--GNSNIRSVGSTVLGFTYLAAGRYSGIVYS--GVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
1JP4 Chain:A ((8-275))---LMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLP--EVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEA-------PAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNPLQYDKEVK


General information:
TITO was launched using:
RESULT:

Template: 1JP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124146 for 1798 contacts (-69.0/contact) +
2D Compatibility (PS) -23011 + (NN) -4102 + (LL) 1500
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -162259.0 ( -90.24 by residue)
QMean score : 0.431

(partial model without unconserved sides chains):
PDB file : Tito_1JP4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JP4-query.scw
PDB file : Tito_Scwrl_1JP4.pdb: