Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKALIFTSLVVVVLIVVTFLYKNNETNDLQVVNVYSSRKEELVRTLFDEFTRNTGIKVRYIIDDYSQLLSRME---NGSGTDVFLTADAVNLILAKKRGLLSQVNSEILKRAIPEKFRDSEGYWFGLTKRTRILVYNKESVDPKD-LSTYEDLANKKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPS-GGDTNQIYAVAAGEGDIAIVNSYYFARILSSERENKKNVANKLG-VFFPNHDSNGVMVNISGAAVTKNAKNRENAIALLEFLVSKQAQELYAKKNQEYPIIEGVEVSNILKFWGDYPQSDLPLSELEKHLFEAVMIADECKWK |
| 1Q35 Chain:A ((2-314)) | ------------------------------NEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFAD--GLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLAR-KPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKS---WAEAAIINFPSGE-HGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Q35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148167 for 2700 contacts (-54.9/contact) +
2D Compatibility (PS) -34261 + (NN) -24545 + (LL) 3532
1D Compatibility (HY) -25200 + (ID) 5900
Total energy: -234541.0 ( -86.87 by residue)
QMean score : 0.596
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