Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPT----FLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKMLEEALSIVKD------TKTKLIGVTVLTSMSNEDLSE-LGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRVGFGHD--DQKRTATPKEAINSGADYIVIGRPITKS-NSPANSAELILKSLS--
1DBT Chain:A ((1-237))
MKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGP-SIVKQLKER---NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRM-SEDAANDQVRVATPAIAREKGSSAIVVGRSITKAE-DPVKAYKAVRLEWEGI
General information:
TITO was launched using:
RESULT:
Template:
1DBT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156669 for 1831 contacts (-85.6/contact) +
2D Compatibility (PS) -23732 + (NN) -9092 + (LL) -176
1D Compatibility (HY) -14800 + (ID) 3900
Total energy: -208369.0 ( -113.80 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1DBT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBT-query.scw
PDB file :
Tito_Scwrl_1DBT.pdb
: