Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1TWZ Chain:B ((39-291))
--KTLIMGILNVTPD----GGSYNEVDAAVRHAKEMRDEGAHIIDIGGES-------VSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM-----------
General information:
TITO was launched using:
RESULT:
Template:
1TWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135180 for 2092 contacts (-64.6/contact) +
2D Compatibility (PS) -27015 + (NN) -23019 + (LL) 844
1D Compatibility (HY) -19600 + (ID) 5400
Total energy: -209370.0 ( -100.08 by residue)
QMean score : 0.717
(partial model without unconserved sides chains):
PDB file :
Tito_1TWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWZ-query.scw
PDB file :
Tito_Scwrl_1TWZ.pdb
: