Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVET-----NQGIYDFDILVVALGFVSETFGIEGMKDHAFQIENVITARELSRHIED--------KFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFVVEVDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVK--RGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAKNIKRILNGESTEEFEYVDRGTVCSLGSHDGVGMVFGKPIAGKKAAFMKKVIDTRAVFKIGGIGLAFKKGKF |
| 3H8L Chain:A ((2-357)) | -----TKVLVLGGRFGALTAAYTLKRLVG-SKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGM-LDKVHVTVFSPGEYLSDL-SPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDE---KGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSM-------TVPKLGYLAVMTGRIAAQHLANRLGVPTKVD----------KYYPTIVCVADNPYE--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3H8L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189833 for 2868 contacts (-66.2/contact) +
2D Compatibility (PS) -36728 + (NN) -8369 + (LL) 4124
1D Compatibility (HY) -16400 + (ID) 3050
Total energy: -250256.0 ( -87.26 by residue)
QMean score : 0.436
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